fix update

updates.d/00-rename-migration.sh

@@ -4,12 +4,12 @@ COREDESKTOP="$HOME/.local/share/coredesktop"
 
 if [ -f ~/.local/bin/coreupdate ]; then
     echo "Migrating coreupdate -> update..."
-    sudo cp "$COREDESKTOP/update" ~/.local/bin/update
+    cp --remove-destination "$COREDESKTOP/update" ~/.local/bin/update
     sudo rm -f ~/.local/bin/coreupdate
 fi
 
 if [ -f ~/.local/bin/corerefresh ]; then
     echo "Migrating corerefresh -> refresh..."
-    sudo cp "$COREDESKTOP/refresh" ~/.local/bin/refresh
+    cp --remove-destination "$COREDESKTOP/refresh" ~/.local/bin/refresh
     sudo rm -f ~/.local/bin/corerefresh
 fi

updates.d/15-services.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+
+COREDESKTOP="$HOME/.local/share/coredesktop"
+
+source "$COREDESKTOP/utils.sh"
+source "$COREDESKTOP/packages.conf"
+
+echo "Checking for new services..."
+enable_services "${SERVICES[@]}"

updates.d/40-ruby.sh

@@ -1,5 +1,8 @@
 #!/bin/bash
 
+echo "Updating mise..."
+mise self-update -y
+
 echo "Updating Ruby and Rails..."
 mise upgrade --bump ruby
 mise reshim

updates.d/45-tmux.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+
+is_installed() {
+  [ -d "$HOME/.tmux/plugins/tpm" ]
+}
+
+run_update() {
+  echo "Updating TPM and tmux plugins..."
+  local failed=0
+  for plugin in "$HOME/.tmux/plugins/"*/; do
+    [ -d "$plugin/.git" ] || continue
+    echo "  $(basename "$plugin")"
+    git -C "$plugin" pull --ff-only --quiet || failed=1
+  done
+  return $failed
+}

updates.d/46-neovim.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+
+# Only the plugins are updated; the kickstart.nvim config itself is the user's to edit.
+is_installed() {
+  command -v nvim &>/dev/null && [ -d "${XDG_DATA_HOME:-$HOME/.local/share}/nvim/lazy/lazy.nvim" ]
+}
+
+run_update() {
+  echo "Updating Neovim plugins..."
+  nvim --headless "+Lazy! sync" +qa
+}

updates.d/60-pipx.sh

@@ -1,4 +1,18 @@
 #!/bin/bash
 
-echo "Updating pipx applications..."
-pipx upgrade-all
+# pipx venvs are tied to the Python they were built with, so a Python upgrade
+# breaks them in a way `pipx upgrade-all` can't repair. Rebuild them when the
+# Python version changes, or when an upgrade fails.
+STAMP="$HOME/.local/state/coredesktop/pipx-python-version"
+CURRENT_PYTHON="$(python3 -c 'import sys; print("%d.%d" % sys.version_info[:2])')"
+
+if [ "$(cat "$STAMP" 2>/dev/null)" != "$CURRENT_PYTHON" ]; then
+    echo "Python changed to $CURRENT_PYTHON, reinstalling pipx applications..."
+    pipx reinstall-all
+else
+    echo "Updating pipx applications..."
+    if ! pipx upgrade-all; then
+        echo "pipx upgrade-all failed, reinstalling pipx applications..."
+        pipx reinstall-all
+    fi
+fi && mkdir -p "$(dirname "$STAMP")" && echo "$CURRENT_PYTHON" > "$STAMP"

updates.d/65-migrate.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+is_installed() {
+  [ -f "$HOME/.local/bin/migrate" ]
+}
+
+run_update() {
+  echo "Updating Migrate..."
+  local tmp
+  tmp="$(mktemp)"
+  if curl -fsSL -o "$tmp" https://github.com/CyphrRiot/Migrate/raw/main/bin/migrate && [ -s "$tmp" ]; then
+    chmod +x "$tmp"
+    mv "$tmp" "$HOME/.local/bin/migrate"
+  else
+    rm -f "$tmp"
+    echo "Could not download Migrate; keeping the current version."
+    return 1
+  fi
+}

updates.d/80-gnome-extensions.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+
+is_installed() {
+  command -v gnome-shell &>/dev/null
+}
+
+run_update() {
+  echo "Updating GNOME extensions..."
+
+  # Reinstall gext if missing or broken (e.g. its pipx venv went stale after a Python upgrade)
+  if ! ~/.local/bin/gext --version &> /dev/null; then
+    echo "gext missing or broken, reinstalling..."
+    pipx uninstall gnome-extensions-cli 2>/dev/null || true
+    pipx install --python "$(which python3)" gnome-extensions-cli --system-site-packages
+  fi
+
+  # Update every enabled user extension to the latest version for this GNOME Shell.
+  # The filesystem backend writes directly to ~/.local/share/gnome-shell/extensions;
+  # GNOME Shell picks up the new code at next login.
+  if ~/.local/bin/gext --filesystem update --user --yes; then
+    echo "GNOME extensions up to date. Log out and back in to load any updated extensions."
+  else
+    echo "gext update failed; GNOME extensions were not updated."
+  fi
+}

updates.d/85-gnome-settings.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+
+COREDESKTOP="$HOME/.local/share/coredesktop"
+
+is_installed() {
+  command -v dconf &>/dev/null
+}
+
+run_update() {
+  bash "$COREDESKTOP/gnome/apply-gnome-settings.sh"
+}

updates.d/90-firmware.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+# Firmware updates often need a reboot, so this only reports what's available.
+is_installed() {
+  command -v fwupdmgr &>/dev/null
+}
+
+run_update() {
+  echo "Checking for firmware updates..."
+  fwupdmgr refresh &>/dev/null
+  # get-updates exits 2 when there is nothing to update
+  if fwupdmgr get-updates --no-unreported-check 2>/dev/null; then
+    echo "Firmware updates are available. Run 'fwupdmgr update' to install them."
+  else
+    echo "No firmware updates available."
+  fi
+  return 0
+}

updates.d/95-cleanup.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+echo "Removing unused Flatpak runtimes..."
+flatpak uninstall --unused -y --noninteractive
+
+if command -v paccache &>/dev/null; then
+  echo "Trimming pacman package cache..."
+  sudo paccache -rk2
+  sudo paccache -ruk0
+fi

updates.d/99-reboot-check.sh

@@ -0,0 +1,6 @@
+#!/bin/bash
+
+# If the running kernel's modules are gone, a newer kernel was installed
+if [ ! -d "/usr/lib/modules/$(uname -r)" ]; then
+  echo "A newer kernel has been installed. Please reboot when convenient."
+fi